Re: [AMBER] Re: Installation of Amber11 under Cygwin on WindowXP

From: Lixia Jin Day <ljin12.asu.edu>
Date: Mon, 4 Jan 2010 15:22:16 -0700

I got the same problem as I run NAB 5.1.2 last week:

$nab -v program_1.nab
cpp cmd: /bin/ucpp -l -I/include program_1.nab
nab2c cmd: /bin/nab2c -nfname program.nab
cc cmd: gcc -I/include program_1.c /lib/linnab.a /lib/libsym.a /lib/lapack.a
/lib/blas.a /lib/f2c.a -lm
gcc: /lib/libsym.a: No such file or directory
cc failed!


On Mon, Jan 4, 2010 at 3:14 PM, Lixia Jin Day <ljin12.asu.edu> wrote:

> No problem with installation. When ranning test, most were passed and got
> this one error message:
>
> Cannot open atom type corresponding
> file/cydrive/d/amber/dat/antechamber/ATOMTYPE_CHECK.TAB, exit
> ./Run.top2mol2: Program error
> make: ***[test.antechamber] Error 1
>
> Thank you for helping!
>
> Lixia
>
>
> On Mon, Jan 4, 2010 at 1:49 PM, case <case.biomaps.rutgers.edu> wrote:
>
>> On Mon, Jan 04, 2010, Lixia Jin Day wrote:
>>
>> > make[1]:gfortran: Command not found
>>
>> You need to install the gfortran compiler. See
>>
>> http://ambermd.org/mswindows.html
>>
>> for a detailed discussion of which cygwin packages to install. Looks like
>> you are missing gcc4-fortran, maybe others as well.
>>
>> ...dac
>>
>>
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>>
>
>
>
> --
> http://public.fotki.com/lily1907/
>



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Received on Mon Jan 04 2010 - 14:30:03 PST
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