[AMBER] Salt bridge time scale

From: Mannan <malie_03.yahoo.co.in>
Date: Mon, 26 Oct 2009 07:27:20 +0530 (IST)

Hi Amber Pals,
 
I would like to plot the time scale of the interaction between Thr Phos and Arg.
I could see visually in VMD, but when calculate the time scale by VMD, I could not get  the phospho related stuff, where as I could get Arg-Glu, Arg-Asp.  I could not get the % of Hbond analysis as well for the Phos.
 
I wanted to plot the various interaction like distance between Phos with Arg, Lys.
 
Thanks in Advance.
 
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Received on Sun Oct 25 2009 - 19:00:02 PDT
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