Dear Steve,
> I am looking for GTP parameters and looked in the achieves. I found
> that ATP and GTP had been deposited on the AMBER homepage site.
> However, looking through all the links, I cannot find them. Have
> they been incorporated into the newer force field/parameters? (I
> have AMBER 8 addition.)
If you are interested I can send you ATP, GTP force field libraries or
any co-factors you might be interested in deriving from XYP (X = A, C,
T, G, dA, dC, dT, dG. Y = M D T Q etc... An even more...).
This force field topology database has been developed in a single
R.E.D. job. Many co-factor analogs can be constructed since a building
block approach has been followed. See the list of cafactors built:
http://archive.ambermd.org/200812/0329.html
regards, Francois
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Received on Wed Sep 02 2009 - 23:06:54 PDT
