Re: [AMBER] Meaning of GMAX

From: case <case.biomaps.rutgers.edu>
Date: Mon, 24 Aug 2009 12:44:34 +0100

On Mon, Aug 24, 2009, E.M. wrote:

> What does GMAX in minimization output stand for?. Also, when the RMS is
> reported, is this taken between alpha carbons of subsequent outputs or
> how is this made?. I just do not know the code, so I do not know what is
> reporting. :/

GMAX is the element of the gradient vector with the largest magnitude. RMS is
the root-mean-square of the gradient vector (has nothing to do with
coordinates.)

...dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Aug 24 2009 - 11:11:24 PDT
Custom Search