[AMBER] ambpdb problem

From: Jio M <jiomm.yahoo.com>
Date: Thu, 30 Jul 2009 20:12:10 +0100

dear AMBER users,

I used ambpdb to create pdb file as ;

-p .prmtop < .rst > .pdb

1) is there any option to get  charges on  the atoms as the structure so seen donot have

any charges... i.e. the pdb formatt. can the prmtop file be used to generate the charges

2) the pdb I am getting donot show bonds in xleap visualiser...but its ok in VMD



AMBER mailing list
Received on Wed Aug 19 2009 - 19:50:50 PDT
Custom Search