Re: [AMBER] How to visualize PCA results without IED?

From: Shozeb Haider <shozeb.haider.pharmacy.ac.uk>
Date: Tue, 28 Jul 2009 12:02:22 +0100

Hi Cat,


You can use a software called PCAZIP. Its free to download from the CCPB
website (http://www.ccpb.ac.uk/software/) and can be used on your
machine. Its very effective for visualisation of PCA results.

We have used it in the article :

Molecular dynamics and principal components analysis of human telomeric
quadruplex multimers.
<http://www.ncbi.nlm.nih.gov/pubmed/18375510?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum>
Haider S, Parkinson GN, Neidle S.
Biophys J. 2008 Jul;95(1):296-311.

Best wishes

Shozeb




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Received on Tue Jul 28 2009 - 10:08:23 PDT