[AMBER] amino acids caps for truncated proteins

From: Andrew Voronkov <drugdesign.yandex.ru>
Date: Thu, 16 Jul 2009 17:31:18 +0100

Dear Amber users,
my question is about capping of amino acids. I would like to study the interaction of amyloid beta with receptors which I m studying, but I want to simulate only binding of the extracellular part of amyloid beta, but not the transmembrane part. How is it possible to make cap to C-tail/N-tails of proteins in Amber and which cap is better to use?

Best regards,
Andrew Voronkov

AMBER mailing list
Received on Thu Jul 16 2009 - 10:10:01 PDT
Custom Search