Re: [AMBER] Acetylate and Amidate

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Thu, 9 Jul 2009 00:13:09 +0100

> What command in xleap do I use to add the ACE and the NH2 to the beginning
> and end of my pdb file protein?

You could try

  loadpdbUsingSequence

I forget the syntax, but it is something like this:

  mymol = loadpdbUsingSequence { ACE RES RES RES NH2 } mymol.pdb

where you replace RES RES RES with your residues (all of them).

Bill

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 08 2009 - 18:10:21 PDT
Custom Search