have you looked at the DNA MD tutorial on the Amber web site? I think it
covers this very well. let us know if you have specific problems with steps
in the tutorial.
On Wed, Jul 8, 2009 at 12:15 PM, balaji nagarajan
<balaji_sethu.hotmail.com>wrote:
>
> Dear amber ,
>
> I have done dynamics of a DNA ,
>
> and I have built some model for the same ,
>
> I would like to check the Rmsd of my each model with the whole trajectory ,
>
> any one can tell me how to give the input script for ptraj ,
> if one considers all the atoms
>
> thanking you
> regards
> balaji
> UOM
>
>
>
>
>
>
> _________________________________________________________________
> More than messages–check out the rest of the Windows Live™.
>
> http://www.microsoft.com/india/windows/windowslive/_______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 08 2009 - 18:07:51 PDT
