Dear Amber users,
I've got error while running the sander of Amber 10 at cluster. A day before with the same flags and input files everything was working ok. So it seems mostly to be the problem on cluster side, but what is the reason for it?
Best regards,
Andrew
MPI process terminated unexpectedly
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002B5E220E250E Unknown Unknown Unknown
libc.so.6 00002B5E2209A913 Unknown Unknown Unknown
libc.so.6 00002B5E2209AA6A Unknown Unknown Unknown
libc.so.6 00002B5E2208FBD4 Unknown Unknown Unknown
libnss_files.so.2 00002B5E2278623A Unknown Unknown Unknown
libnss_files.so.2 00002B5E22786D4B Unknown Unknown Unknown
libc.so.6 00002B5E22103581 Unknown Unknown Unknown
libc.so.6 00002B5E22102EB3 Unknown Unknown Unknown
sander.MPI 00000000008FE32D Unknown Unknown Unknown
sander.MPI 00000000008DDE31 Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002B5E22050CF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002B05378AC50E Unknown Unknown Unknown
libc.so.6 00002B0537864913 Unknown Unknown Unknown
libc.so.6 00002B0537864A6A Unknown Unknown Unknown
libc.so.6 00002B0537859BD4 Unknown Unknown Unknown
libibverbs.so.1 00002B0536F6D98A Unknown Unknown Unknown
libibverbs.so.1 00002B0536F6D06B Unknown Unknown Unknown
sander.MPI 00000000008DC28C Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002B053781ACF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002B0E516EB50E Unknown Unknown Unknown
libc.so.6 00002B0E516C7557 Unknown Unknown Unknown
libibverbs.so.1 00002B0E50DAC800 Unknown Unknown Unknown
libibverbs.so.1 00002B0E50DAC06B Unknown Unknown Unknown
sander.MPI 00000000008DC28C Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002B0E51659CF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002AABBF7DD50E Unknown Unknown Unknown
libc.so.6 00002AABBF795913 Unknown Unknown Unknown
libc.so.6 00002AABBF795A6A Unknown Unknown Unknown
libc.so.6 00002AABBF78ABD4 Unknown Unknown Unknown
libnss_files.so.2 00002AABBFE8123A Unknown Unknown Unknown
libnss_files.so.2 00002AABBFE81D4B Unknown Unknown Unknown
libc.so.6 00002AABBF7FE581 Unknown Unknown Unknown
libc.so.6 00002AABBF7FDEB3 Unknown Unknown Unknown
sander.MPI 00000000008FE32D Unknown Unknown Unknown
sander.MPI 00000000008DDE31 Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002AABBF74BCF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002B4C71DAE50E Unknown Unknown Unknown
libc.so.6 00002B4C71D66913 Unknown Unknown Unknown
libc.so.6 00002B4C71D66A6A Unknown Unknown Unknown
libc.so.6 00002B4C71D5BBD4 Unknown Unknown Unknown
libibverbs.so.1 00002B4C7146F98A Unknown Unknown Unknown
libibverbs.so.1 00002B4C7146F06B Unknown Unknown Unknown
sander.MPI 00000000008DC28C Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002B4C71D1CCF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002B0F6D9C250E Unknown Unknown Unknown
libc.so.6 00002B0F6D99E557 Unknown Unknown Unknown
libibverbs.so.1 00002B0F6D083800 Unknown Unknown Unknown
libibverbs.so.1 00002B0F6D08306B Unknown Unknown Unknown
sander.MPI 00000000008DC28C Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002B0F6D930CF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
forrtl: error (69): process interrupted (SIGINT)
Image PC Routine Line Source
libc.so.6 00002AB3B918E50E Unknown Unknown Unknown
libc.so.6 00002AB3B9146913 Unknown Unknown Unknown
libc.so.6 00002AB3B9146A6A Unknown Unknown Unknown
libc.so.6 00002AB3B913BBD4 Unknown Unknown Unknown
libibverbs.so.1 00002AB3B884F98A Unknown Unknown Unknown
libibverbs.so.1 00002AB3B884F06B Unknown Unknown Unknown
sander.MPI 00000000008DC28C Unknown Unknown Unknown
sander.MPI 00000000008E7A06 Unknown Unknown Unknown
sander.MPI 00000000008BCCE8 Unknown Unknown Unknown
sander.MPI 00000000008BC936 Unknown Unknown Unknown
sander.MPI 00000000008B9593 Unknown Unknown Unknown
sander.MPI 00000000004BD7D2 Unknown Unknown Unknown
sander.MPI 000000000041F65C Unknown Unknown Unknown
libc.so.6 00002AB3B90FCCF4 Unknown Unknown Unknown
sander.MPI 000000000041F569 Unknown Unknown Unknown
Exit code -1 signaled from node-10-01
Killing remote processes...PMGR_COLLECTIVE ERROR: reading from (read()
Connection reset by peer errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
PMGR_COLLECTIVE ERROR: reading from (read() Connection reset by peer
errno=104) . file pmgr_collective_mpispawn.c:121
DONE
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Received on Wed Jul 08 2009 - 08:34:44 PDT
