[AMBER] non standard residue

From: Neha Gandhi <n.gandhiau.gmail.com>
Date: Mon, 6 Jul 2009 09:07:35 +0100

Hi List,

I have a protein structure (protein.pdb) and it has a residue called ACA in
chain C. I have prepared lib file (ACA.lib). Then I describe head and tail
group of this non standard residue. I saved the file as ACA.lib. I m yet to
calculate the charges.

I try to load the whole protein after loading the lib file. The N-terminal
of ACA residue connects well with the previous residue but the C-terminal of
this residue misses out the connectivity with the N atom of the proceeding
residue which is MET.

Your help is appreciated.

Neha Gandhi,
School of Biomedical Sciences,
Curtin University of Technology,
GPO Box U1987 Perth,
Western Australia 6845

Received on Mon Jul 06 2009 - 17:37:04 PDT
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