[AMBER] non standard residue

From: Neha Gandhi <n.gandhiau.gmail.com>
Date: Mon, 6 Jul 2009 09:07:35 +0100

Hi List,

I have a protein structure (protein.pdb) and it has a residue called ACA in
chain C. I have prepared lib file (ACA.lib). Then I describe head and tail
group of this non standard residue. I saved the file as ACA.lib. I m yet to
calculate the charges.

I try to load the whole protein after loading the lib file. The N-terminal
of ACA residue connects well with the previous residue but the C-terminal of
this residue misses out the connectivity with the N atom of the proceeding
residue which is MET.

Your help is appreciated.

-- 
Regards,
Neha Gandhi,
School of Biomedical Sciences,
Curtin University of Technology,
GPO Box U1987 Perth,
Western Australia 6845






Received on Mon Jul 06 2009 - 17:37:04 PDT
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