Re: [AMBER] Half charge reported during NN ?

From: case <case.biomaps.rutgers.edu>
Date: Wed, 24 Jun 2009 18:31:45 +0100

On Wed, Jun 24, 2009, Marek Maly wrote:
>
> So during the minimisation for the entropy calculation, charge is
> probably automatically scaled down by coeficient 0.5 regarding to
> setting of dielectric constant or something like that ?

Exactly. In principle the printout of the net charge should be done before
scaling the charges by the square root of epsilson; patches are welcome.

...dac


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Received on Mon Jul 06 2009 - 11:09:25 PDT
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