Dear amber users,
I have modified protein system that need construct top and crd files in xleap. Sidechain (NH2) of non-terminal Lysine in protein A form amide with C-terminal (C=O) of protein B, the whole system seems like fork or "Y" sharp. In leap, I have tried to directly build bond between N atom of Lysine in protein A and C atom in protein B, but hydrogen can not match request. How can deal with such situation? Built new residue type or any other ideas? Thanks a lot.
Jian
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Received on Mon Jul 06 2009 - 11:05:55 PDT
