[AMBER] how to create prmtop and inpcrd files for covalent neutral phenylalanine

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From: Madhurima Jana <tinni.217.gmail.com>
Date: Thu, 18 Jun 2009 13:39:03 +0100

Hi,

I want to create prmtop and inpcrd files for the amino acid
pheylalanine (neutral) which has terminal groups NH2 (not NH or NH3+)
and COOH (not CO or COO-). Amber force fields contain NPHE, CPHE and
PHE residues. Can anyone please suggest how to create these files.

Thanks,
Madhurima

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Received on Mon Jul 06 2009 - 10:01:15 PDT