Thanks David.
Indeed, I tried many options and I put here the one that I guess it can be a
starter:
make clean
./configure_amber -nosanderidc -mpi -p4 gfortran
make -e AMBERBUILDFLAGS="-I/sw/include" -j 2 parallel
I got:
[snip]
Undefined symbols:
"_mpi_reduce_", referenced from:
___decomp_MOD_collect_dec in decomp.o
___ncsu_sander_hooks_MOD_rem_preinit in ncsu-sander-hooks.o
[long snip]
___ncsu_sander_hooks_MOD_rem_preinit in ncsu-sander-hooks.o
"_mpi_isend_", referenced from:
_zx_xy_transpose_ in ew_fft.o
_xy_zx_transpose_ in ew_fft.o
___fft_MOD_transpose in spatial_fft.o
___fft_MOD_ftranspose in spatial_fft.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[1]: *** [sander.MPI] Error 1
make: *** [parallel] Error 2
I was hoping that someone here in the list would have done it for mac intel
already and could share his/her recipe.
Cheers,
Alan
On Wed, Jun 10, 2009 at 16:34, David A. Case <case.biomaps.rutgers.edu>wrote:
> On Wed, Jun 10, 2009, Alan wrote:
>
> > I am using a mac intel (old macbook pro 32 bit only), with Fink (openmpi)
> > and intel compilers.
> >
> > Does anyone have a suggestion of how to do this? I have tried:
> >
> > make clean
> >
> > ./configure_amber -mpi ifort_macosx
> >
> > make -j 2 parallel
> >
> > for no avail.
>
> What does "no avail" mean??? Without knowing the error(s), it's hard to
> be of much help. You could certainly try to leave out the "-j 2" flag:
> there
> may be glitches with parallel *compilation* (as opposed to parallel
> execution
> of the resulting executable). But I'm just guessing here...
>
> ...dac
>
>
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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Received on Mon Jul 06 2009 - 08:35:25 PDT
