Dear Ross,
> This does look pretty weird. Do you have the prmtop and original
> inpcrd
> file? Plus the restart file produced by the run? This looks to me
> like there
> must be some issue with the initial structure
I do and it looks ok.
> If you watch the trajectory file can you see where things start going
> weird?
I am not sure but it seems to become weird with the production process
> ndfmin and ntcm are 'very' deprecated. I have to go back to AMBER
> v7.0 to
> even find a description in the manual
As you well noticed, I updated AMBER 7 to AMBER 10 but I did the
protocol with AMBER 7 manual...
Thank you so much, I will look into my input file and make it better !
I guess it
will make this strange problem disappear
--
Jordan MONNET (3rd grade student)
Bachelor in Biology & Computer science
University of Paris Diderot (Paris VII)
Phone: +336 20 70 24 93
http://monnet.jordan.free.fr/
" The most exciting phrase to hear in science, the one that heralds new
discoveries, is not 'Eureka!' but 'That's funny...' "
Isaac Asimov
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Received on Wed Jun 10 2009 - 01:09:33 PDT
