[AMBER] Can we define +1 or -1 charge for an organic drug using GAFF?

From: Catein Catherine <askamber23.hotmail.com>
Date: Mon, 8 Jun 2009 16:16:23 +0100

Dear All,

 

Could you mind to let me know if it is possible to use GAFF to define parameters for a charged organic drugs?, if yes, how can we define the net charge of the drug is +1 to represent a protonated NH2 functional group or -1 charge for a COO- functional group?

 

Best regards & thanks,

 

Cat

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Received on Tue Jun 09 2009 - 01:11:09 PDT
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