Hi There,
I would to understand that warning below that appears only when I use
verbosity 1 with leap. The leap commands follow:
verbosity 1
source leaprc.ff99SB
prot = loadpdb ProteinAmber.pdb
solvatebox prot TIP3PBOX 10.0
addions prot Cl- 4
saveamberparm prot Protein.prmtop Protein.inpcrd
savepdb prot ProteinNAMDpdb
quit
Building improper torsion parameters.
** Warning: No sp2 improper torsion term for C*-CN-CB-CA
atoms are: CG CE2 CD2 CE3
** Warning: No sp2 improper torsion term for NA-CA-CN-CB
atoms are: NE1 CZ2 CE2 CD2
Many thanks in advance,Alan
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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Received on Sat Jun 06 2009 - 01:07:47 PDT
