Hi, all
I want to perform essential dynamics analysis using IED. I have
generated the .ppj and .pev file using Ptraj. But when I use IED to
visualize the results. I found the protein shows abnormal. There are some
abormal bond between atoms. I don't know why. I want to get a pdb file from
PCA analysis and then to do domain motion analysis using DYNDOM software.
How to save a pdb file from PCA. Anyone can help me? The attatched is the
files I have produced using ptraj and the script I used. Thank you.
All the best,
-Chunli
chunliyan.mail.utexas.edu
<
http://cn.mc150.mail.yahoo.com/mc/compose?to=chunliyan.mail.utexas.edu> or
chunliyan.yahoo.com.cn
<
http://cn.mc150.mail.yahoo.com/mc/compose?to=chunliyan.yahoo.com.cn>
- application/octet-stream attachment: PCA.rar
Received on Wed May 20 2009 - 16:21:57 PDT
