On Tue, Mar 17, 2009, Pansy Patel wrote:
>
> I would like to convert a .mol2 file into a .pdb file.
> The 'antechamber' in Amber is designed to convert single residues.
> My file is a DNA structure model in .mol2 format with another small organic molecule interacting with it.
> I tried to use babel to convert the file
> but all the atoms are termed RES which is not the right atom type
> Is there some way that I can generate atom types for the DNA part of the mol2 file using amber or any other accessible software ?
>
Have you tried using LEaP: use loadmol2 followed by savepdb? You may
have to do some experimentation and hand editing (either of the input or
output file), but it may get you close.
....dac
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Received on Wed Mar 18 2009 - 01:17:09 PDT
