[AMBER] convert .mol2 file to .pdb with atomtype definitions

From: Pansy Patel <pdpatel.mail.ucf.edu>
Date: Tue, 17 Mar 2009 15:50:57 +0000

Hello, Amber:

I would like to convert a .mol2 file into a .pdb file.
The 'antechamber' in Amber is designed to convert single residues.
My file is a DNA structure model in .mol2 format with another small organic molecule interacting with it.
I tried to use babel to convert the file
but all the atoms are termed RES which is not the right atom type
Is there some way that I can generate atom types for the DNA part of the mol2 file using amber or any other accessible software ?

I use Amber9, and I don't have access to 'Sybyl'.

Thank you.

Pansy D. Patel

AMBER mailing list
Received on Wed Mar 18 2009 - 01:17:08 PDT
Custom Search