Hello,
Do you have all the input files(nan.in, .prmtop, .inpcrd or .rst) in the same directory where you are running the program? Try making a new directory, copy all the iput files to that directory and check the permissions of all the files. (use ls -l command).Which is your machine type, os, your status? do you have root permissions? If so try run the program as root to check it is due to permission problems.
/\/\athew
Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India
email mathew_kvarghese.yahoo.co.in
===========================================================================
--- On Tue, 17/3/09, Nancy <nancy4619.163.com> wrote:
From: Nancy <nancy4619.163.com>
Subject: [AMBER] Unit 5 Error on OPEN: nan.in
To: amber.ambermd.org
Date: Tuesday, 17 March, 2009, 2:41 PM
Dear all,
I am sorry to send this letter again , i am using amber10 in linux .When i use Sander to make minimization of solvent(explicit solvent),
$AMBERHOME/exe/sander -O -i nan.in -o nan.out -p nan.prmtop -c nan.inpcrd -r nan.rst -ref nan.inpcrd
The input and output files are in the attachment .
It showed that Unit 5 Error on OPEN :nan.in. I have tried many times and i am sure the directory is right, then i tried example B1 of amber tutorials about DNA ,just made the same mistake ,i do not konw where is wrong, can any body help me ?
Thanks in advance!
Nancy
网易邮箱，中国第一大电子邮件服务商
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Received on Wed Mar 18 2009 - 01:15:39 PDT
