what are the percentages? you might fluctuate between 310 and alpha-
but you're right that it can't be both at once.
On Thu, Mar 5, 2009 at 8:54 AM, Beale, John <jbeale.stlcop.edu> wrote:
> I am using "secstruct" in ptraj to compute the secondary structure of a
> small protein. The summary file out of secstruct shows that there is an
> alpha helical region of the secondary structure that overlaps with a
> 3-10 helix. I get two structural designations for the same region of the
> protein. How can this be explained? I expected to see a discrete alpha
> helix.
>
>
>
> John M. Beale, Ph,D,
>
> Associate Professor of Medicinal Chemistry
>
> St. Louis College of Pharmacy
>
> 4588 Parkview Place
>
> St. Louis, Missouri 63110
>
> (314)-446-8461
>
> Cell: (314)-315-0409
>
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>
> jbeale.stlcop.edu
>
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Received on Fri Mar 06 2009 - 01:21:55 PST
