I am using "secstruct" in ptraj to compute the secondary structure of a
small protein. The summary file out of secstruct shows that there is an
alpha helical region of the secondary structure that overlaps with a
3-10 helix. I get two structural designations for the same region of the
protein. How can this be explained? I expected to see a discrete alpha
helix.
John M. Beale, Ph,D,
Associate Professor of Medicinal Chemistry
St. Louis College of Pharmacy
4588 Parkview Place
St. Louis, Missouri 63110
(314)-446-8461
Cell: (314)-315-0409
FAX (314) 446-8460
jbeale.stlcop.edu
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Received on Fri Mar 06 2009 - 01:21:40 PST
