AMBER: CG and HC atoms partial charges in AMBER

From: Stephane Abel <>
Date: Thu, 20 Nov 2008 16:40:17 +0100

Hi AMBER users

 I would like to simulate a dodecan chain with the AMBER force field
but *without* the AMBER code (i use an other MD package). So I construct
manually the topology and the parameter for this molecule. For
subsequent simulations, I will use GLYCAM_06. So I have a little
question about the partial charge of the carbon (CG) and hydrogen atoms
(HC). How to obtain them ?

Thank you for your help


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Received on Fri Dec 05 2008 - 16:09:47 PST
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