Hello,
I think you should use glycam and ff03. This works pretty well. Glycam deals
with carbohydrates efficiently. Biomacromolecules and water are included in
ff03 along with some ions
Hope this will help.
Regards
Florent
Le jeudi 20 novembre 2008, Wang,Ying a écrit :
> Hi, dear all,
> if i want to simulate a system including glycoprotein, protein,
> polysacchride and ions. which forcefiled should i use? gaff?
> Thanks a lot!
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo.scripps.edu
--
-------------------------------------------------
Dr Florent Barbault
Maitre de conferences
NEW ADDRESS !!!
Universite Paris Diderot
Laboratoire ITODYS
15 rue Jean de Baïf, bâtiment Lavoisier
75013 Paris FRANCE
http://www.itodys.univ-paris7.fr/
tel : (33) 01-57-27-88-50
e-mail : florent.barbault.univ-paris-diderot.fr
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Fri Dec 05 2008 - 16:09:27 PST
