On Mon, Nov 03, 2008, Carlos Simmerling wrote:
>
> also I STRONGLY recommend against igb=1. we've published several
> papers (as have others) showing that this is not a good option. I
> recommend igb=5 and mbondi2 radii.
Just a (somewhat off-topic) note: the comments above are based on studies on
proteins. For nucleic acids, we have less extensive study, but igb=1 is
likely to still be a viable option there.
...dac
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Received on Fri Dec 05 2008 - 10:30:49 PST
