Dear amber users,
I am using TIP3PBOX to solvate ubiquitin. After the explicit water
simulation, I reimage the water back into the box, but find out part of the
ubiquitin side chain is out of the water box. I guss the box is too small.
I am trying to re-run the simulation. But I don't know how to change the
size of TIP3PBOX. I want to use solvateoct.
Can somebody help me out?
Qiuting Hong
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Received on Fri Sep 26 2008 - 05:08:46 PDT
