Re: AMBER: What's making my system lose total energy?

From: David Cerutti <dcerutti.mccammon.ucsd.edu>
Date: Mon, 17 Mar 2008 20:52:10 -0700 (PDT)

Heathen! Burn him!

Yes, I mentioned at the coda to my query that I had looked very hard to
make sure this system hard truly equilibrated, and have simulated it for
many ns in NPT as well as NVT before beginning NVE dynamics. I suspected
that the nscm may be slowly bleeding away energy; I think that my problems
are solved, so thank you!

Dave
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Received on Fri Apr 18 2008 - 21:11:54 PDT
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