Hello,
I want to make a box of a simple molecule. So what I did is create the
molecule in a program called WebView Pro, and save the pdb file. With this
file, I was able to create .prepin file using antechamber, and using the
prepin file I was able to create the topology and coordinate files using
tleap. (All this is done on a Red Hat machine, using Amber 8, on Intel
platform. I am not sure of the compiler version).
After I did this, I want to make copies of the molecule such that there are
100 of such molecule. I was told by a senior that Amber 5 has Edit, that
will create multiple copies of this molecule (create the coordinates and
charges in a pdb file). Is there a similar program that I can use in Amber
8 to do this?
Thank you.
-Mohd Farid Ismail-
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Received on Sun Feb 10 2008 - 06:07:11 PST
