Thanks, dac:
It works when I added "nobox" option in ptraj input.
Xuelin
-----Original Message-----
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf
Of David A. Case
Sent: Wednesday, September 05, 2007 1:12 PM
To: amber.scripps.edu
Subject: Re: AMBER: amber md movie using Chimera. .
On Wed, Sep 05, 2007, Wang, Xuelin wrote:
>
> I have a problem to make an Amber MD movie using Chimera. I am sure I
> used the right Amber top file and mdcrd file, since I can use VMD to
> display them. In my trajectory file, I already striped water and
> counter-ions. Only box information was left with trajectory.
Why did you leave the box information? Try giving a "nobox" option in
the
trajout line of ptraj, and see if that helps.
...good luck...dac
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Received on Sun Sep 09 2007 - 06:07:10 PDT
