Re: AMBER: amber md movie using Chimera

From: David A. Case <>
Date: Wed, 5 Sep 2007 11:12:27 -0700

On Wed, Sep 05, 2007, Wang, Xuelin wrote:
> I have a problem to make an Amber MD movie using Chimera. I am sure I
> used the right Amber top file and mdcrd file, since I can use VMD to
> display them. In my trajectory file, I already striped water and
> counter-ions. Only box information was left with trajectory.

Why did you leave the box information? Try giving a "nobox" option in the
trajout line of ptraj, and see if that helps.

...good luck...dac

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Received on Sun Sep 09 2007 - 06:07:09 PDT
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