Hi, thanks very much!!
Yes, it works now.
On Wed Aug 22 11:18:11 EDT 2007, Wei Zhang <zweig.scripps.edu>
wrote:
> Hi,
>
> looks like you have hydrogens in your pdb file.
>
>
>
> try to remove all the hydrogens in your file and load again.
>
> Sincerely,
>
> Wei
>
>
>
> WANG,YING wrote:
>
>> HI, DEAR AMBER MEMBERS,
>> I also have the "could not find type" problem when I run the
>> xleap.
>> The message as below:
>>
>>> xx=loadpdb "xx.pdb"
>>
>> loading pdb file: ./xx.pdb
>> created a new atom named: H within residue: .R<NPHE 1>
>> ...
>> ...
>> Leap added 19 missing atoms according to residue templates:
>> 19H/long pairs
>> The file contained 17 atoms not in residue templates
>>
>>
>>> saveamberparm xx xx.prmtop xx.inpcrd
>>
>> Checking unit.
>> FATAL: ATOM .R<NPHE 1>.A<H 23>does not have a type
>> ...
>> ...
>> Failed to generate parameters
>>
>> This pdb file was downloaded from PDB bank. I check it but cannot
>> figure out what's happen............. Could you help me? Thanks
>> very
>> much!!
>>
>>
>>
>>
>>
>>
>>
>>
>> -- WANG,YING
>> Mechanical and Aerospace Engineering
>> University of Florida
>>
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>>
>>
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>
--
WANG,YING
Mechanical and Aerospace Engineering
University of Florida
Office: NEB 139
TEL: 001-352-846-3030
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Received on Sun Aug 26 2007 - 06:07:11 PDT
