Thanks.
Unfortunately parallel compilation failed, while serial had been successful.
What I did (Amber9 Debian Linux amd64 etch):
openmpi-1.2.3 compiled with
./configure CC=/opt/intel/cce/9.1.042/bin/icc
CXX=/opt/intel/cce/9.1.042/bin/icpc F77=/opt/intel/fce/9.1.036/bin/ifort
FC=/opt/intel/fce/9.1.036/bin/ifort --with-libnuma=/usr/lib
ompi_info |grep libnuma
ompi_info |grep maffinity
reported OK
Then I set:
export MPI_HOME=/usr/local/openmpi-1.2.3
Then:
make clean
./configure -openmpi ifort_x86_64
make parallel
returned
make[1]: [Sander_MPI] Error 1
make: *** [parallel] Error 2.
Then I did:
make clean
./configure -openmpi ifort_x86_64
make parallel >& errors.log
That log file is attached. Unfortunately, the very many errors of type
"undefined references to 'mpi_bcast'" are unclear to me.
Thanks for help.
francesco pietra
./configure -openmpi ifort_x86_64
reported:
Error, MPI_HOME must be set.
OK, for my installation and bash it should be
--- "David A. Case" <case.scripps.edu> wrote:
> On Mon, Jul 23, 2007, Francesco Pietra wrote:
>
> > I compiled OpenMPI with "ifort" and "icc".
> >
> > For the successful serial compilation of Amber9 I only set "ifort_x86_64"
> for
> > my platform in ./configure. Then, I noticed that also "gcc" was used for
> the
> > compilation.
> >
> > Should the equivalent (if any) for "icc" be set in ./configure for the
> parallel
> > compilation that I am ready to carry out? Or Sander and pmend and what else
> is
> > compiled parallel use only the fortran compiler?
>
> It's not clear if you tried what you have, and it failed, or if you have not
> yet tried anything. Don't be afraid to experiment!
>
> I don't *think* it makes any difference which C compiler is used.
>
> ...dac
>
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Received on Wed Jul 25 2007 - 06:07:28 PDT
