Re: AMBER: Antechamber

From: Cenk Andac <cenk_andac.yahoo.com>
Date: Sun, 27 May 2007 23:56:57 -0700 (PDT)

Hi,

As far as I know, you should be able to obtain publishable results with AM1-BCC charges (generated by antechamber) and GAFF parameters (generated by parmchk), which are I think (based on my previous experiences) able to reproduce results obtained with HF/6-31G* charges determined by RESP method.
You may also want to use Conjugate Gradient method of Divcon in the -mk flag of antechamber to get a better convergence during AM1-BCC charge computations..

regards,

jenk


Catein Catherine <askamber23.hotmail.com> wrote: Dear All,

I am doing the calculations for a drug, I develope the force fields with
antechamber, do i still need to use REM to define the charges for everyatoms
as what was illustrated in the tutorial for uncommon residues?

Best regards,

cat

_________________________________________________________________
Get 10Mb extra storage for MSN Hotmail. Subscribe Now!
http://join.msn.com/?pgmarket=en-hk

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu


       
---------------------------------
Got a little couch potato?
Check out fun summer activities for kids.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed May 30 2007 - 06:07:13 PDT
Custom Search