Re :Re: AMBER: multiple excecution of sander

From: Achuth Prabhu <achuthpnr.yahoo.co.in>
Date: Fri, 18 May 2007 07:03:23 +0100 (BST)

 dear sirs,
   thank you for your reply.
   im using a server with 4 cpus and iam unable to
install the parallel version because of some c
compiler problems.when i tried tio install the mpi
libraries first, it said the c compiler cannot create
executables. the MD using sander is taken up by only
one cpu (why it is always 12% ?) . thats why I asked
such a question.now i reinstalled the serial version.
i tried three sander MDs simulatneously and the system
now uses two of its cpus (12% each) (much better than
one cpu i think). is there any solution to this? the
system is running somewhat slower during working.

thanks in advance

achu

--- Carlos Simmerling <carlos.simmerling.gmail.com>
wrote:

> sander itself has no limit. your computer may run
> slowly
> with multiple sander instances but you need to be
> more clear
> about what kind of problem you are talking about and
> waht computer(s) you are using.
>
> On 5/17/07, Achuth Prabhu <achuthpnr.yahoo.co.in>
> wrote:
> >
> > sir,
> > Kindly tell me if amber provides multiple
> execution
> > of sander simultaneously. if so also tell me the
> > maximum no of sander programs that can be run
> > simultaneously.
> >
> >
>


Send free SMS to your Friends on Mobile from your Yahoo! Messenger. Download Now! http://messenger.yahoo.com/download.php
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun May 20 2007 - 06:07:30 PDT
Custom Search