AMBER: protonate

From: Christopher Gaughan <>
Date: Wed, 16 May 2007 11:56:37 -0400

Dear all,

I am using the protonate command to put some missing hydrogens into a pdb
file. When I do so, an error message is returned:

chrisg.new_mphase:~$ protonate -i g1_oct_ter_noprot.pdb >
        7000 atoms read from file
 This version only dimensioned for 7000 atoms!

Is there any way I can increase the # of atoms that can be accommodated?


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Received on Sun May 20 2007 - 06:07:08 PDT
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