AMBER: Simulated Annealing - Best way to create randomness

From: Seth Lilavivat <>
Date: Fri, 04 May 2007 16:42:18 -0400

Dear Amber Users,

What is the best way to create different structures over the same annealing
algorithm? Is it unsual to start an annealing run with an initial temperature?
 Currently my approach is to run several annealing runs consecutively using the
last coordinates as the starting coordinates for the next run.

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Received on Sun May 06 2007 - 06:07:32 PDT
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