Hi
I am trying to perform MM-PBSA calculations on an MD run (10ns). I have
been reading several protocols and I was wondering about 2 things.
1. How would my calculations differ if I take snapshots every 250ps over
the last 8ns instead of snapshots taken at 10ps interval during the last
2ns of my simulations ?
2. Why is latter the preferred method ?
I shall extremely grateful to make me understand this point.
Best wishes
Shozeb Haider
The London School of Pharmacy
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Received on Wed Dec 20 2006 - 06:07:22 PST
