Hi Li,
one of the ways to do that is to take pdb file with one water molecule
and then solvate it with water box in xleap.
Best regards,
Sergey
Li Su wrote:
> Hi,
> Sorry to bother. I am wondering if there is a way in amber to
> construct a box of water with no protein for simulation. Thank you in
> advance.
>
>
> Best,
> Li
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Dec 20 2006 - 06:07:18 PST
