One simple queastions, if the membrane protein
contains both the hydrophobic part and the hydropholic
part, shoud we make a box containg both water and the
lipid bilayer?
Best regards.
Fenghui Fan
--- ²άΘ½ <tomcao.mail.bnu.edu.cn> wrote:
> Hi all
>
> I want to perform MD simulation on membrane protein
> in lipid bilayer
> environment,but how could I set the force field
> parameters for lipid such as DPPC
> membrane?I've found several papers related to
> simulation of lipid membrane using
> AMBER4.0(with OPLS as force field parameter for
> lipid membrane),but I've no idea
> about how to set this in my current issue:AMBER9.0.
>
> Thanks a lot!
> Ran Cao
>
>
>
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Received on Fri Dec 08 2006 - 16:23:07 PST
