AMBER: How to run MD simulation of a silicon containing complex with AMBER9?

From: Chengwen Chen <chenchengwen.gmail.com>
Date: Thu, 30 Nov 2006 15:06:54 +0800

 Dear all,

I am plan to do a MD simulation of DNA duplex bound by small molecules
(silicon atom contained) with AMBER9. I seems that there are no silicon
atom parameters defined in AMBER force field. How can I get those
parameters? Or any other method to run the simulation?

Thank you very much!

Best Wishes,
Wendy

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Received on Sun Dec 03 2006 - 06:07:21 PST