Dear All
When I use antechamber to load a peptoid sequence
(peptoids have the amino acid side chain appended to
amide nitrogen ratther then alpha carbon) containing
charged residues (like lysine). it says "ODD NUMBER OF
ELECTRONS"....Check!
There are three lysine residues and the total number of electrons come out to be 834 but antechamber is taking 837 number of electrons (not considering the +3 charge of the three lysine residues.
Please suggest how to make the prepin file of such charged residues..
Sincerely
Priya Anand
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Received on Wed Oct 18 2006 - 06:07:12 PDT
