Re: AMBER: (no subject)

From: David A. Case <case.scripps.edu>
Date: Fri, 6 Oct 2006 09:20:03 -0700

On Thu, Oct 05, 2006, Prashanth Athri wrote:

> ----------------------------------------------------------
> Initial minimization
> &cntrl
> imin=1, maxcyc=5000, ncyc=200
> cut=16, ntb=0, igb=1,
> /
> Hold
> 50.0
> ATOM 1 1
> END
> Hold
> 50.0
> ATOM 14 16
> END
> END
>
> ---------------------------------------

Note that the coordinate restraints are only invoked if you set ntr=1, which
you are not doing in the above script.

If you want dihedral restraints, the best course is probably to treat them
as "NMR" restraints.

...good luck...dac

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Received on Sun Oct 08 2006 - 06:07:30 PDT
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