AMBER: energy data for limited part of system

From: Tanya Johannsen <>
Date: Wed, 13 Sep 2006 10:57:15 -0700 (PDT)

Dear AMBER community:

I would like to record energy data for a limited part
of the system during minimization and molecular
dynamics runs (in addition to calculating the energy
of the entire system). My system has about 2500
protein residues plus a lot of explicit water; I want
the energy of a specific chain of about 400 residues
within that system. Is there any way that it is
possible to do this in AMBER?

Thank you in advance for any suggestions.


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Received on Sun Sep 17 2006 - 06:07:06 PDT
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