I tink they are different. The TIP3P water model is
used in the explicit MD>
Best regards.
Fenghui Fan
--- Ramdas Pophale <ramdas.pophale.gmail.com> wrote:
> Hello friends,
>
> I am contemplating using amber94 force field for
> simulations of cyclic
> peptides. It is an implicit solvent simulation where
> solvent effects are
> taken into consideration through GB-SASA models.
> Since the parameter files
> mention about TIP3P water model, does it mean the
> parameters are not
> optimized (hence not a good choice) for the implicit
> solvent model? If
> that's the case, could anyone suggest an alternative
> within or (without)
> Amber? Thanks for your time.
>
> Regards,
>
> Ramdas Pophale.
>
__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
http://mail.yahoo.com
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Sep 06 2006 - 06:07:19 PDT
