AMBER: Implicit Water - Force field parameters

From: Ramdas Pophale <>
Date: Tue, 5 Sep 2006 14:22:49 -0500

Hello friends,

I am contemplating using amber94 force field for simulations of cyclic
peptides. It is an implicit solvent simulation where solvent effects are
taken into consideration through GB-SASA models. Since the parameter files
mention about TIP3P water model, does it mean the parameters are not
optimized (hence not a good choice) for the implicit solvent model? If
that's the case, could anyone suggest an alternative within or (without)
Amber? Thanks for your time.


Ramdas Pophale.

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Received on Wed Sep 06 2006 - 06:07:19 PDT
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