Hi Bo,
You can check out the distance command in ptraj if what you want is the
distance between centers of masses. If you want the minimum distance
between two regions, you probably need to program that yourself.
Guanglei
Baker, Bo-Yang wrote:
> Hello Amber:
>
> I would like to measure the minmum distances between two regions (two loops) of my target protein during MD run. I know how to measure the distance between two residues. Is there way to measure the distance between two regions, such from the center of each region?
>
> Thank you for advices
>
> Bo
>
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Received on Wed Aug 02 2006 - 06:07:12 PDT
