Re: AMBER: PDB from .rst?

From: priya priya <priyaanand_27.yahoo.co.in>
Date: Fri, 21 Jul 2006 04:24:08 +0100 (BST)

hi
   
  You can make pdb from .rst using a command in AMBER8
   
  $AMBERHOME/exe/ambpdb -p filename.prmtop < filename.rst > filename.pdb
   
  then load this pdb in xleap using command
   
  filename = loadpdb "filename.pdb"
   
  then to have a view

  edit filename
   
  Regards
  Priya
  
Evan Kelly <ebkelly.ualberta.ca> wrote:
  Hi Everyone,

  This is probably a simple question, but I am trying to create a .pdb file from the sander output of a simulation I've done. I have the original .pdb file, inpcrd file, prmtop file, and the outputted .rst file. Can anyone suggest how this can be done?
  

  Thanks!
    

  ----------------------------------
  Evan Kelly
  ebkelly.ualberta.ca






                                 
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Received on Sun Jul 23 2006 - 06:07:10 PDT