AMBER: RMS & PCA

From: Zu Thur Yew <yewzt.intern.bii-sg.org>
Date: Mon, 17 Jul 2006 15:55:12 +0100

Hi,

I'm new to Amber and would like to ask 2 questions relating to rms & PCA

1. Is it possible to rms fit structures with respect to backbone atoms,
but get a residue by residue rmsd, like residue 1 compared to residue 1
of the reference structure?

2. Is it correct to say that "image" is not needed, but a rms fit is
required for PCA?

Thanks, any help/advice is much appreciated!

ZT
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jul 19 2006 - 06:07:07 PDT
Custom Search